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Governor’s renewed salmon strategy faces decisive period in the current Legislature

State legislation designed to enhance salmon habitat by requiring protective buffers along streams has been set aside pending further discussions over the coming year. Meanwhile, several other salmon-protection measures proposed by the governor could move forward with decisive funding from the Legislature.

Washington Capitol, Olympia

The buffer bill (HB 1838), named the Lorraine Loomis Act, would prohibit degradation of streamside habitat while encouraging restoration within prescribed “riparian management zones” on both public and private lands. Such requirements would apply to farmland, areas destined for development and even properties undergoing redevelopment. The bill is part of Gov. Jay Inslee’s wide-ranging “Salmon Strategy Update” (PDF 1.4 mb), which was proposed with a price tag of $187 million for the first year, according to a policy brief (PDF 1.4 mb) on the topic.
Maintaining vegetation — including tall trees — along streams helps to shade the water and avoid temperatures that can be debilitating or lethal to fish. (See my story in the Encyclopedia of Puget Sound.) Vegetated buffers also can filter out pollution from upstream areas, provide food and shelter for fish and wildlife, and help to mitigate high and low streamflows.
During recent hearings, numerous farmers and representatives of agricultural groups complained that they had not been consulted before the buffer bill was dropped on them. They said the stream-buffer requirements could take a severe financial toll on their operations, even if they were provided with some compensation for production losses and grants for restoration, as proposed in the bill.
Faced with this powerful opposition, the bill never came up for a vote in the only committee where a hearing was held: the House Rural Development, Agriculture and Natural Resources Committee. (Videos available via TVW.)
On the Senate side, the handwriting was already on the wall. On Feb. 3, the Senate Agriculture, Water, Natural Resources and Parks Committee held a work session on the governor’s salmon strategy. Sen. Kevin Van De Wege, the committee’s chairman, asked the governor’s staffers if they had done any public polling to measure support for the buffers bill.
“I think, to be honest with you, the way the bill was introduced, I don’t think it has passed the court of public opinion,” Van De Wege said. “I would be worried about doing a heavy lift like that to have it simply overturned by referendum — which I think would be likely the way the bill was introduced.”
Jennifer Hennessey, the governor’s policy adviser on environment, water and ocean health, said she was unaware of any polls on the issue. The legislation resulted from discussions about the needs of salmon with Washington’s native tribes, she noted.
“We certainly recognize that there is more work that needs to be done to talk about the needs of riparian habitat with a variety of stakeholders and the way we get to the end goal of improving habitat for salmon,” Hennessey said.
Other provisions
While legal mandates for buffers are off the table for the current legislative session, other aspects of the bill could be accomplished with funding in the supplemental budget, a draft of which should soon be made public.

Under consideration for funding is a process to facilitate a “diverse stakeholder group” that would discuss buffers as part of a legislative package for the next session, according to Sen. Christine Rolfes, D-Bainbridge Island, who chairs the Senate Ways and Means Committee.
Other programs described within the bill could be started or enhanced with dedicated funding, she said. They could include high-tech mapping to locate important streamside habitat, an analysis to identify high-priority areas for restoration, and a program to build up a nursery stock of trees for extensive planting efforts. Appropriations for these efforts would be directed to the state departments of Ecology and Fish and Wildlife.
Protecting salmon streams with vegetated buffers is an urgent need in the effort to restore salmon populations, as climate change increases its impact, said Dave Herrera, fisheries and wildlife policy director for the Skokomish Tribe and vice chairman of the Puget Sound Salmon Recovery Council.
“The tribes have been talking about the need for adequate riparian buffers for a long time, not just on agricultural land but for all lands with salmon streams,” he said. In 2019, during the annual Centennial Accord discussions, Gov. Inslee made a commitment to the tribes to establish statewide buffer standards. (See the June 4, 2020, column by the late tribal leader Lorraine Loomis, for whom the legislation is named.)
Representatives of the Washington Department of Agriculture and Washington Conservation Commission were involved in meetings about the buffer standards, Herrera said. “I was surprised to hear that the communities served by those agencies were not aware.”
Herrera said he is now getting a lesson about the pace of the legislative process and remains optimistic that people will come to understand the needs of salmon in time to save them. Failure of the Lorraine Loomis Act during this legislative session is a setback, he said, but things are at least moving forward.
“To his credit, the governor stepped up and developed a bill that got introduced, and it is setting up a conversation that we have been needing for a long time,” he said. “People need to understand the urgency. It is getting to the point where we have to ask ourselves if we really want to recover salmon or if it is just too hard for us to do.”
Buffers defined
As proposed, salmon streams would be mapped with riparian management zones to identify the width of required buffers. That width relates to the area’s 200-year “site potential tree height” — the height that an average tree would reach in 200 years in a given location. Thus the buffer can range from 100 to 240 feet from the edge of a stream, depending on soils, rainfall, topography and other factors. These are the standards recommended in a report called “Riparian Ecosystems, Volume 2, Management Recommendations” by the Department of Fish and Wildlife.
Under proposed legislation, now on hold, salmon habitat would be protected by creating a buffer zone beyond the immediate stream channel, as recommended in “Riparian Ecosystems, Volume 2.” (Click on image to download document.)

Using tree height to establish the buffer width is partially based on the idea that trees falling into a stream add critical structure, helping to create pools and riffles needed for safe salmon migration and spawning. The idea grew out of findings from a 1993 report by the multi-agency federal Forest Ecosystem Management Assessment Team (PDF 68.5 mb), or FEMAT.
Some people testifying against the proposed buffers bill say the tree-height approach lacks an adequate scientific foundation to become a requirement in state law. No doubt this will be a major topic of discussion during the anticipated stakeholders meetings, which are likely to include representatives of farmers, developers, local governments, businesses, environmental interests and more. By the way, forestland that is subject to the Washington Forest Protection Act must comply with separate buffer regulations, which undergo changes based on emerging science.
As written into the proposed legislation, the required buffers on private land could be reduced if the protected area takes up more than half the parcel.
Voluntary stewardship
Several people who testified on the buffers bill worried that it would supplant a voluntary stewardship program in which farmers work with local government experts to establish reasonable buffers protective of salmon habitat without overly affecting their livelihood.
“Voluntary programs do work when they are sufficiently funded, but the state has not provided enough funding,” said Tom Salzer, executive director of the Washington Association of Conservation Districts, which represents 45 local districts.
Over the last three biennia, the Washington Conservation Commission requested nearly $20 million for the Conservation Reserve Enhancement Program, Salzer testified during the first hearing on the bill. That program provides $3 in federal funds for every $1 in state funding for habitat protection and improvement. The Legislature provided less than half the requested amount, losing out on nearly $30 million in habitat restoration money, he said.
“We believe that if sufficient funding had been provided for voluntary conservation, today there would be no perceived need for this legislation, he added.
The Voluntary Stewardship Program, created in 2011, enlisted 27 of the 49 counties before a cutoff deadline in 2012. A new bill in this year’s Legislature (HB 1856) would allow any other county to join by July 1, 2023. The main concern expressed during hearings on the bill was that each local program would receive even less money if the Legislature failed to increase overall funding. The bill is now up for a vote on the House floor.
Budget decisions
Beyond the proposed buffer requirements now on hold along with a proposal for $100 million in grants for affected property owners, the governor’s revised salmon strategy includes the following elements:

  • Riparian protection mapping: Buffer widths and existing conditions could be identified for streams throughout the state. WDFW, $4.7 million.
  • Plant propagation: Public and private nurseries could be funded to grow trees and plants available for buffer restoration. State Conservation Commission, $1.3 million.
  • Toxic tires: The search continues to identify solutions to a deadly chemical associated with tires that washes into stormwater, gets into streams and kills coho salmon, with impairment to other species. Ideas include filtering stormwater and identifying alternative chemicals. Department of Ecology, $2.7 million.
  • Stormwater: Grants are proposed for increasing local stormwater capacity, $4 million, and encouraging public-private stormwater partnerships, $1 million, both through the Department of Ecology.
  • Streamflow restoration: “Green infrastructure” projects can capture and store excess water during heavy rainfall events and then release the water when streamflows drop to critically low levels during dry periods. Benefits include reduced pollution and cooler water in streams. Ecology, $5.5 million.
  • Fish passage programs: Efforts to remove or replace culverts and other barriers to salmon migration could be increased by prioritizing the needs and drafting new state rules to address the problem. WDFW, $654,000.
  • Harvest monitoring and enforcement: WDFW could increase its ability to protect salmon during commercial and sport fisheries with increased enforcement, $1.2 million; environmental prosecution, $852,000; and fisheries planning, $842,000. A license buy-back program could reduce gillnets on the Columbia River, $16.7 million.
  • Hatchery programs: An evaluation of hatchery programs in Puget Sound by WDFW could help to improve survival rates of hatchery fish and reduce impacts on wild salmon, $4.3 million. Also proposed is a new hatchery on the Deschutes River in South Puget Sound, $2.2 million.
  • Hydropower: State officials could increase their collaborative work on the Columbia and Snake River dam issues during federal relicensing to ensure state interests are met in protecting salmon and water quality, $1.1 million. A Snake River mitigation study will help determine if the removal of four dams is a feasible and reasonable solution, $375,000.
  • Skagit River protection: The Department of Commerce will seek to protect the upper Skagit from future development, $4.5 million.
  • Science and monitoring: WDFW could increase monitoring of adult and juvenile salmon migration to evaluate habitat function and salmon productivity, $2.4 million. Other studies could focus on forage fish populations, which are important to salmon and many other species, $721,000.
  • Salmon recovery plans: Puget Sound Partnership could coordinate the update to salmon recovery plans in the Puget Sound region, including support to local governments that must implement some aspects of the plan, $2.6 million.

Behind-the-scenes budget negotiations over salmon funding have been ongoing this week, with decisions to affect funding for these proposed projects that could be started this year.

Salish Sea Currents magazine cover image

Call for student science writers to report on SSEC 2022

The University of Washington Puget Sound Institute is sponsoring up to 10 student writers to report short (500-word) stories about science findings presented at the upcoming Salish Sea Ecosystem Conference. The conference will be held online April 26-28. We are offering $200 per story and can cover conference registration costs. Successful writers will publish their work in our magazine Salish Sea Currents. Writers will also be encouraged to promote their work through social media. The project will include a two-hour pre-conference orientation meeting in late March or early April.
Preference will be given to graduate students with an interest in science writing. Those who would like to be involved can send a CV and two writing samples directly to Jeff Rice at: jeffrice @ uw.edu. Spots will fill up quickly, so we encourage students to contact us as soon as possible.

Salish Sea Currents magazine cover image

Call for student science writers to report on SSEC 2022

The University of Washington Puget Sound Institute is sponsoring up to 10 student writers to report short (500-word) stories about science findings presented at the upcoming Salish Sea Ecosystem Conference. The conference will be held online April 26-28. We are offering $200 per story and can cover conference registration costs. Successful writers will publish their work in our magazine Salish Sea Currents. Writers will also be encouraged to promote their work through social media. The project will include a two-hour pre-conference orientation meeting in late March or early April.
Preference will be given to graduate students with an interest in science writing. Those who would like to be involved can send a CV and two writing samples directly to Jeff Rice at: jeffrice @ uw.edu. Spots will fill up quickly, so we encourage students to contact us as soon as possible.

The University of Washington Puget Sound Institute is located at the Center for Urban Waters on Tacoma's Thea Foss Waterway.

Job opening: Research Scientist/Engineer Assistant

The University of Washington Puget Sound Institute is seeking a Research Scientist experienced in applying state of the art numerical models, or analysis and reporting of results for large model and measured physical data sets. This position will expand current capabilities within the Puget Sound Institute and the Salish Sea Modeling Center at the Center for Urban Waters, supporting applied water quality modeling for regional utilities, research centers, environmental NGOs, and state, federal, and tribal governments. We are particularly interested in candidates who have experience in data analysis using Python or MATLAB, or related coding experience, and communicating the scientific findings of coastal oceanography modeling or related disciplines, in reports and papers.  This full-time position with benefits has a preferred start date in February 2022, and is currently funded for one year with the expectation of continuation. The position is housed at the Center for Urban Waters in Tacoma, working in-person with the potential for some teleworking.
Read the full job description and apply for the position at the University of Washington Human Resources website.
Search for Req #:201723

The University of Washington Puget Sound Institute is located at the Center for Urban Waters on Tacoma's Thea Foss Waterway.

Job opening: Research Scientist/Engineer Assistant

The University of Washington Puget Sound Institute is seeking a Research Scientist experienced in applying state of the art numerical models, or analysis and reporting of results for large model and measured physical data sets. This position will expand current capabilities within the Puget Sound Institute and the Salish Sea Modeling Center at the Center for Urban Waters, supporting applied water quality modeling for regional utilities, research centers, environmental NGOs, and state, federal, and tribal governments. We are particularly interested in candidates who have experience in data analysis using Python or MATLAB, or related coding experience, and communicating the scientific findings of coastal oceanography modeling or related disciplines, in reports and papers.  This full-time position with benefits has a preferred start date in February 2022, and is currently funded for one year with the expectation of continuation. The position is housed at the Center for Urban Waters in Tacoma, working in-person with the potential for some teleworking.
Read the full job description and apply for the position at the University of Washington Human Resources website.
Search for Req #:201723

The University of Washington Puget Sound Institute is located at the Center for Urban Waters on Tacoma's Thea Foss Waterway.

Job opening: Stakeholder engagement and science communication manager

The University of Washington Puget Sound Institute (PSI) is seeking a highly motivated stakeholder engagement and science communication manager, with experience working with municipal staff and their stakeholders in wastewater or stormwater, marine/aquatic resources, or other interdisciplinary environmental management and planning areas. The position will expand current PSI capabilities to synthesize and communicate scientific results in a compelling way for managers, stakeholders and the general public seeking to understand complex water quality challenges in Puget Sound, and scientifically valid solutions. See the Salish Sea Modeling Center website for an example of scientific products and results. This position is housed at the Center for Urban Waters in Tacoma, Washington. The person hired will be expected to work in person with the potential for some teleworking, with additional meetings with partners throughout the metropolitan areas. This full-time position with benefits has a preferred start date in February 2022, and is currently funded for one year with expectation of continued funding.
Read the full job description and apply for the position at the University of Washington Human Resources website.
Search for Req #: 202722

North Pacific expedition gets underway aboard four ocean-going research ships

A North Pacific research expedition is underway, with projects said to be bigger, bolder and more scientifically sophisticated than cruises in 2019 and 2020.
Four research vessels carrying more than 60 scientists from various countries will span out across the Pacific Ocean to increase their understanding of salmon — including migration, environmental stresses, availability of prey and risks from predators. Researchers aboard a U.S. ship operated by the National Oceanic and Atmospheric Administration left from Port Angeles this morning.

The NOAA Ship Bell M. Shimada

There has never been a research cruise as involved as this expedition, scheduled from now into April, according to Laurie Weitkamp, chief U.S. scientist for the 2022 Pan-Pacific Winter High Seas Expedition. The geographic reach is much larger than during similar expeditions in 2019 and 2020, Laurie told me. Advanced research equipment will help to improve data-gathering, and the analyses are growing ever more sophisticated.
Many salmon populations in the North Pacific have been declining since the 1990s. An important goal of the expedition is to better understand how physical and biological conditions can affect marine survival, especially during this critical winter period. Understanding the causes of poor marine survival could lead to better management of the ocean resources, experts say.
It will be interesting to follow the movement of the four ships in real time, as displayed on the Live Vessel Tracking Map.
The Live Vessel Tracking Map shows the location of the NOAH Ship Bell M. Shimada after leaving Port Angeles this morning. // Map: International Year of the Salmon

In addition, anyone interested can learn about shipboard activities as they are reported on social media:

“It is incredibly exciting to be part of such an amazing scientific expedition,” said Weitkamp, a salmon biologist with NOAA’s Northwest Fisheries Science Center in Newport, Ore. “This is definitely a once-in-a-career opportunity, and I am really looking forward to all the discoveries we will collectively make. It’s been a long road putting it all together, but I am confident this cruise will change how we think about salmon in the ocean. It’s Darwin’s voyage of the Beagle of our time.”
“This is an exciting time for salmon science,” agreed Brian Riddell, science adviser for Canada’s Pacific Salmon Foundation. “For the first time in decades, international cooperation across the North Pacific will provide an invaluable snapshot of salmon distributions, their health, and their environmental conditions in these times of changing climate. I expect these results will be foundational as we also begin a much larger study under the United Nations Decade of Ocean Science.”
For these and other prepared statements, check out the news release about the expedition.
The research fleet for the 2022 expedition consists of the NOAAS Bell M. Shimada from the United States, the CCGR Sir John Franklin from Canada, the RV TINRO from Russia, and a Canadian commercial fishing vessel, the FV Raw Spirit. This year’s expedition was originally planned for last year but was delayed because of COVID-19.

The Canadian Coast Guard vessel Sir John Franklin

To cover a major section of the ocean, the ships will travel in strategic patterns within assigned zones, as shown on the map above.
The North Pacific expedition involves a variety of government, academic, industry and non-governmental groups. It is part of a five-year endeavor called the International Year of the Salmon, which strives to understand the role of salmon in a worldwide ecosystem affected by human activities. The hemispheric partnership is led by the North Pacific Anadromous Fish Commission and the North Atlantic Salmon Conservation Organization.
Some areas of study:
Distribution of various salmon species: A key question has been where the salmon can be found at various times and places in the ocean. After the 2019 expedition, researchers were raising questions about the location of pink salmon, because so few were caught in deep waters where more had been expected, as I reported in Our Water Ways, March 22, 2019. On the other hand, the researchers had expected to catch fewer coho than they did that year, because they thought coho would be closer to the coast.
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In 2020 (without U.S. scientists because of COVID), the research vessels found more pink and chum salmon early in the expedition than they did later in the same area, suggesting that the fish were schooling more than expected from previous Russian studies. See Our Water Ways, April 9, 2020.
Also, besides covering more area of the ocean at one time, the researchers will deploy gillnets as well as trawl equipment to see whether different types of fishing gear catch different fish in the open ocean. Varying environmental conditions during all three years of research could help to identify what causes the fish to move to particular places.
Expanding use of environmental DNA: The technique of identifying what species are present in a given area by testing for DNA in the water has undergone major advancements. Now, thanks to a more extensive genetic baseline, researchers are able to identify many different populations of salmon as related to their streams of origin. Studies in 2019 and 2020 showed that the presence of salmon observed by using eDNA techniques was quite similar to the actual fish caught in the nets.
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These eDNA techniques also can determine the presence of species that only come to the surface at night, such as squid, or species that tend to avoid the ships, such salmon sharks and Dall’s porpoises, noted Christoph Deeg, postdoctoral fellow at the University of British Columbia, explaining the preliminary results from the 2019 and 2020 expeditions during an online seminar. Using eDNA to locate species that eat salmon, compete with them for prey, or provide them nutrition can help define the dynamic interactions taking place in the oceanic food web. Check out the online seminar featuring Deeg and Kristi Miller-Saunders, head of molecular genetics at Canada’s Department of Fisheries and Oceans.
Health and condition of salmon: The health of the salmon can be judged in part by their size at a certain age. In 2019, chum salmon seemed skinny and their stomachs were often empty, compared to coho salmon which seemed in better shape. The question of where the coho were finding prey not consumed by chum remained an open question. Measuring salmon stomach contents and analyzing fatty acids will continue to provide clues about what different salmon are eating.

New genomic techniques are being used to screen for pathogens in salmon, including a variety of bacteria and viruses. Non-lethal sampling involves using a swab on salmon gills, not unlike testing for the COVID virus in humans, according to Kristi Miller-Saunders. Preliminary analyses from the 2019 expedition revealed 21 pathogens in coho, chum, pink, and sockeye salmon.
Genetic techniques also can be used to identify chemicals produced by salmon under stress, with specific biomarkers determining the type of stress: temperature, low oxygen, viral disease and so on. The expedition is expected to result in the most comprehensive study of salmon health ever conducted in the winter, leading to insights into ocean mortality among salmon.
Ocean conditions: Besides traditional equipment that can measure ocean temperature, salinity, oxygen levels and other measures, the 2022 expedition will deploy underwater gliders, shaped like torpedoes, which monitor conditions as they move along. Gliders can be equipped with active and passive acoustic sensors to help locate marine creatures with sonar and identify species by the sounds they make. (Read the article by Caroline Graham, including glider routes, on the Year of the Salmon website.) Expedition ships also will deploy Argo floats that will drift with the currents and record various water quality data, including oxygen levels.
Plankton production and distribution: Since phytoplankton form the base of the food web, it is important to understand what limits their growth. Measuring levels of different types of phytoplankton and the surrounding physical conditions — from temperature to trace metals to stratification — could help explain the factors that limit primary production and ultimately the food for salmon. Studies of what drives the growth and consumption of different types of zooplankton in the ocean is another important piece of the puzzle.
As for financing the expedition, multiple sources of funding came together, including contributions of ship time by the U.S. and Canada as well as additional financial resources from agencies of the two governments. In addition, donations came from the North Pacific Research Board, the Great Pacific Foundation, the Pacific Salmon Foundation, the Russian Federal Research Institute of Fisheries and Oceanography, Japan Fisheries Research and Education Agency, the North Pacific Anadromous Fish Commission, the North Pacific Fisheries Commission, the Alaska Department of Fish and Game, the Washington Department of Fish and Wildlife, the Tula Foundation, the University of Alaska Fairbanks, the University of British Columbia, Oregon State University, and the University of Washington.

A treasure trove of ‘big ideas’ for Puget Sound

A series of reports from the Puget Sound Institute will synthesize key findings from close to 100 projects funded over the past five years by the Environmental Protection Agency. 
Six years ago, the EPA authorized more than $20 million dollars for projects to protect, restore and study critical habitats like beaches and floodplains in Puget Sound. The result is what PSI research scientist Aimee Kinney describes as a treasure trove of new information that will help guide future Puget Sound recovery efforts.
“These are the big ideas of the last five years,” says Kinney who will pull together what the grant recipients found and what they want to share with managers and decision makers. Kinney’s work will continue for two years and will examine the outcomes of 97 different projects on topics ranging from zooplankton to shoreline armoring.

PSI research scientist Aimee Kinney
PSI research scientist Aimee Kinney

The funded projects were part of a 2015 initiative driven by what state and federal agencies have termed Implementation Strategies. The strategies identify areas of focus for funding in Puget Sound and provide a detailed roadmap for future research and planning.
Kinney’s work is supported by the Washington State Departments of Fish and Wildlife, Natural Resources, and Commerce, which teamed up to distribute the grants on behalf of the EPA’s National Estuary Program. That money was distributed over a five-year period from 2016 – 2020. Now, in 2022, most of the projects have been completed and managers are hoping to apply what they learned. “This is a good time to look back on what worked well and how we can move it forward,” Kinney says. “This gives us a chance to see how the research connects.”
Kinney describes the synthesis work as daunting in scale “but incredibly interesting because the projects are all so different and creative.” The work largely focuses on Puget Sound habitats and runs the gamut from beach restoration to scientific research.
One major project highlighted in the study includes the continued development of a Puget Sound-wide zooplankton monitoring program. Zooplankton, tiny creatures at the base of the food web, are critical to the survival of salmon and most species living in Puget Sound. Other projects include public outreach such as the Shore Friendly program which educates shoreline homeowners about alternatives to environmentally damaging shoreline armoring. A full list of projects is available here.
Once Kinney and her team have completed their overviews, the Puget Sound Institute will report the results to a wide audience of stakeholders and policymakers. The study will also include analyses and recommendations for funders and future research.
A zooplankton monitoring program is one of the projects that will be featured in PSI’s upcoming syntheses. Zooplankton include tiny animals like these krill and copepods. Photo: Jeff Napp, NOAA/NMFS/AFSC (CC BY 2.0)

“We’ll look at who needs to know about these findings and then figure out the most effective ways to reach them,” Kinney says. “You shouldn’t just get a report from a project and put it on a shelf and be done with it. You need to connect it to other research to learn from it.”
Reports from the study will be ongoing throughout 2022 and 2023 and will conclude in early 2024. When completed, the syntheses will cover topics related to Implementation Strategies for shoreline armoring, floodplains and estuaries, land development and cover, Chinook salmon, and oil spills. The project is sponsored by the EPA-funded Habitat Strategic Initiative.
Related: Implementation Strategies will target Puget Sound ‘Vital Signs’ (Encyclopedia of Puget Sound)

Scientists look for answers in methane bubbles rising from bottom of Puget Sound

In 2011, sonar operators aboard the ocean-going Research Vessel Thomas G. Thompson inadvertently recorded a surprising natural phenomenon, as the 274-foot ship traversed through Puget Sound while returning to port at the University of Washington.
At the time, researchers on board were focused on a host of other projects. They might not have known that the ship’s multi-beam sonar was even turned on. They certainly didn’t realize that the sonar was picking up images that would later be interpreted as multiple plumes of methane bubbles rising from the bottom of Puget Sound.

Methane bubble plumes (yellow and white circles) are shown along the ship paths (purple). Black lines depict fault zones. Major sewer outfalls, shown as black squares, do not line up with the plumes so were ruled out as a source. (From article by Johnson et al, UW)

“Nobody looked at the data until about three years ago, when a former student of mine was working on a project looking at bubble plumes out on the Washington (Coast) margins,” said Paul Johnson, a UW professor of oceanography. “What she found was astonishing.”
The initial discovery of the methane plumes, by Susan Merle of Oregon State University, would lead to further discoveries of methane bubbles throughout most of Puget Sound. The findings have raised many interesting questions while providing implications related to the Puget Sound food web, studies of earthquake faults and even worldwide climate-change research. Johnson, Merle and other collaborators just published their first report on Puget Sound’s methane bubbles in the journal “Geochemistry, Geophysics, Geosystems.”
Nobody was even looking for plumes of bubbles in Puget Sound when Merle, a senior research assistant at OSU’s Cooperative Institute for Marine Resources Studies, began looking at eight-year-old archived sonar data from the RV Thompson. Following the ship’s tracklines, she observed the data as the sonar picked up images of methane bubble plumes along the coast. The sonar was still on when the ship entered Puget Sound. Merle kept following the data, not realizing that the surprising bubble plumes being revealed by the recorded sonar were all the way into Central Puget Sound, off Kingston on the Kitsap Peninsula.
“Nobody knew that there were methane bubble plumes there,” Johnson said after confirming her findings. “I said, ‘This is incredible. I wonder if there are other data out there to verify this.’”
The UW’s smaller 72-foot Research Vessel Rachel Carson operates with a less sophisticated single-beam sonar, but the ship travels all over Puget Sound, carrying student as well as professional researchers, generally on short trips. Like the RV Thompson, the RV Carson records sonar soundings wherever it goes, and those data records are kept on file.
Johnson retrieved the data from 35 cruises and found much more evidence of bubble plumes.
“There were these bubble plumes all over the place,” Johnson said, “so I said, ‘Let me have a day with the Carson,’ and we went up to Kingston in 2019.”
An instrument package was dropped to the bottom to pick up samples of water and gas around the plumes. “Sure enough, it was methane,” Johnson noted.
Thanks to a grant from the National Science Foundation for “speculative” research that might lead to breakthroughs, Johnson and his colleagues began to map bubble plumes throughout Puget Sound. They found bubbles from the Tacoma Narrows to Everett and also in Hood Canal, some 350 plumes in all.
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Besides Kingston, the deep water off Seattle’s Alki Point contained a surprising number of the plumes, which are described as clusters of holes in the sea bed through which the bubbles pass. Johnson said one can get a general idea of the effect by turning a kitchen colander upside down and submerging it in a sink full of water to see bubbles emerging through the holes.
By using remotely operated vehicles, the researchers can record video of the bubbles emerging out of sharp, well-defined holes, 3 to 5 inches in diameter and roughly 3 feet apart. More than a few holes appeared to be abandoned, not producing any bubbles. Others intermittently released a series of bubbles that rose to the surface.
“You can tell which are active because of bacteria mats,” Johnson said, explaining that the bubble plumes can be a rich feeding ground for methane-loving bacteria, which grow around the holes.
In mapping the bubble plumes, it became clear that large numbers were aligned along geologic fault zones, primarily the ones running east and west, known as the Seattle, Tacoma and South Whidbey faults. Others lined up with smaller north-south faults, but the greatest number of bubble plumes occurred where the faults intersected, such as off Alki Point in West Seattle.
Much of this phenomenon has yet to be explained, Johnson said. One idea is that the methane gas is largely confined beneath a layer of clay and compressed sediments laid down during the last glacial period. If so, the methane may be rising up through cracks in the confining layer, cracks created through tectonic activity.
Methane gas is produced naturally during the breakdown of organic compounds found in all living things. Biogenic methane is produced during digestion by certain types of bacteria. Thermogenic methane occurs at higher temperatures, especially under pressure. (See discussion in Science Direct.)
Because of the lower temperatures in Puget Sound, Johnson said he suspects that the methane is from biological processes. Off the Washington and Oregon coasts, both biogenic and thermogenic methane are being released from thousands of bubble plumes, with pronounced clusters in a north-south band some 30 miles off the coast. This region is along the tectonic boundary where the Juan de Fuca oceanic plate collides with the North American continental plate.
High temperatures and pressures in this subduction zone leads to the release of fluids and methane gas. The vast majority of plumes are seen on the seaward side of the continental shelf in waters about 500 feet deep. Faults in this region, created by powerful subduction earthquakes, appear to be the routes for methane gas and fluids to escape to the surface.
An early hypothesis suggested that the bubbles in Puget Sound might be coming up from this underlying subduction zone, but that has not panned out. The chemical signature of the methane in Puget Sound, as revealed through isotope analysis, does not match that from sources deep underground, where samples can be obtained from terrestrial hot springs and water wells.
Because the methane feeds bacteria at the base of the food web, bubble plumes off the coast have been found to flourish with biological activity, including large populations of krill and fish, Johnson said.
“Fishermen know where these areas are, because they are biological hotspots,” he said.
How this methane may affect the Puget Sound ecosystem is yet to be studied in detail, Johnson said. The answer may depend on the location and specific physical and chemical conditions. While the methane is likely to increase biological productivity, it may also play a role in the low-oxygen conditions that can affect sea life and create other problems.
Because the bubble plumes seem to be coming up through faults underlying Puget Sound, seismologists might be able to use them to locate unknown geological features, identify changes over time, or determine which faults are active.
These findings also are relevant to climate change, as scientists search to find other natural sources of methane. Since methane is a powerful greenhouse gas, climatologists are challenged to identify all natural as well as human-caused sources in order to predict the effects of reduced emissions. (See “Methane Budget,” Global Carbon Project.)
Globally, between 35 and 50 percent of methane emissions are believed to come from natural sources, including wetlands, according to the Environmental Protection Agency.
Methane’s lifetime in the atmosphere is much shorter than carbon dioxide, but methane is more efficient at trapping radiation. That’s why this gas raises major concerns. Pound for pound, the impact of methane is 25 times greater than carbon dioxide over a 100-year period, according to a report from the Intergovernmental Panel on Climate Change. In 2019, methane was said to account for about 10 percent of all U.S. greenhouse gas emissions from human activities.
The total amount of methane released from Puget Sound is relatively small when considering the total methane from many natural and human sources — including natural-gas leaks, raising livestock and garbage dumps. Still, Johnson hopes to launch a project that would estimate the total atmospheric emissions from the bubble plumes, while continuing to examine what is venting from all these holes. These new findings also point to ways to search for other natural methane sources around the world.
Related work by Shima Abadi, an associate professor at UW Bothell, involves analyzing the sound that the bubbles make and determining how that might relate to the amount of gas being released and other factors.
Other authors of the new paper are Tor Bjorklund, an engineer in UW oceanography; Chenyu (Fiona) Wang, a former UW undergraduate; Susan Hautala, a UW associate professor of oceanography; Jerry (Junzhe) Liu, a senior in oceanography; Tamara Baumberger, assistant professor at OSU; Nicholas D. Ward, affiliate assistant professor in UW Oceanography; and Sharon L. Walker of NOAA’s Pacific Marine Environmental Laboratory.

Ecology, EPA now under the gun to adopt new water quality criteria for aquatic creatures

Long delays in updating state water-quality standards to protect orcas, fish and other aquatic species appear to have finally caught up with the Washington Department of Ecology and its federal counterpart, the Environmental Protection Agency.
In a court ruling this week, U.S. District Judge Marsha Pechman of Seattle found that Ecology has “abdicated its duties” to update certain water-quality standards, as required by the federal Clean Water Act. Meanwhile, she said, EPA has failed to meet its legal oversight obligations to ensure that adequate water-quality standards are protective of aquatic creatures.
The lawsuit, brought by Northwest Environmental Advocates, followed a petition filed by the group in 2013 seeking to get EPA to revise Washington’s water quality standards for aquatic species. The petition followed years of delay by the state. The standards, including numeric aquatic life criteria, place limits on toxic chemicals found in the state’s waterways. It took four years, but EPA eventually denied the petition, refusing to make a determination about whether or not the state’s existing water quality standards were consistent with the Clean Water Act.
In its denial and later court pleadings, EPA stressed its desire to support Ecology’s efforts to update aquatic life criteria. Ecology had discussed the update and even proposed it as part of the agency’s 2015-2020 strategic plan, but the work was never started. EPA admitted that Washington’s aquatic life criteria had not been updated for most chemicals since 1992, even though formal reviews and updates are required every three years, noted Judge Pechman in her ruling.
The judge’s order, issued Wednesday, requires EPA to determine within 180 days if the state’s current water quality standards are consistent with the Clean Water Act or if they need to be revised. If they are determined to be inadequate, the act itself requires EPA to promptly promulgate new regulations — unless the state adopts acceptable standards in the meantime.
Ecology officials acknowledge that the agency has been slow to adopt new aquatic life criteria. In fact, the required three-year “triennial review” has not been conducted since 2010. Ecology currently is going through a new triennial review, and the agency’s draft work plan lists the update to aquatic life criteria as a priority over the next four years.
“We have not conducted a triennial review since 2010 because we were in continual rulemaking efforts for the water quality standards,” states the introduction to the draft work plan (PDF 494 kb).
No doubt Ecology dedicated a lot of time and effort to other water-quality rules the past decade. Much public attention — including a legislative battle — was focused on human exposures to toxic chemicals, as Ecology worked through the long development of new human health criteria. The discussions largely revolved around fish-consumption rates for people who eat a lot of fish, along with what was considered an allowable cancer risk.
In a controversial move after Ecology completed its work, EPA refused to accept some of the state’s human health criteria, imposing stronger restrictions than Ecology proposed. The criteria were later reversed by President Trump’s EPA. Even today, the issue is not yet resolved, with a revised rule in the works from EPA in the midst of a lawsuit. (See Ecology’s timeline along with other background.) I have been following these issues since their inception in 2010, including a 2015 article in the Kitsap Sun newspaper.
Some of the rule-making that Ecology says contributed to delays:

Since EPA is in charge of enforcing the provisions of the Clean Water Act, Judge Pechman focused her attention on EPA’s failure to take charge of the situation, other than to encourage Ecology to get moving on the aquatic life criteria:
“The CWA (Clean Water Act) operates on a principle of cooperative federalism where states take the lead in setting WQS (water quality standards) with the goal of eliminating pollutant discharge into navigable waters to protect and enhance human and aquatic life,” the judge wrote in her order (PDF 228 kb). “States must create WQS specific to aquatic life and review them every three years to determine whether new or revised standards are necessary.
“But while states play a lead role in setting WQS, EPA serves as a backstop,” she continued. “Not only does EPA have to review state-adopted WQS, but it must also ‘promptly prepare and publish’ new WQS for a state ‘in any case where the administrator determines that a revised or new standard is necessary to meet the requirements of this chapter.’…
“So while EPA wanted to ‘work in partnership to efficiently and effectively allocate resources to address pollution and accelerate state adoption of new and revised criteria,’ nothing in the record showed that Washington was a willing partner. And certainly nothing in the record supports EPA’s belief that inaction would be an efficient or effective way of ensuring adequate WQS or complying with the goals and requirements of the CWA.”
The judge calls out specific criteria that EPA has recommended for updates, based on scientific studies, including aquatic life criteria for ammonia and copper. She did not accept EPA’s excuse that Ecology may have higher priorities or that EPA lacks the resources to undertake the rulemaking.
“This wait-and-see approach appears particularly ill-conceived in light of EPA’s recognition that copper pollution has an ‘adverse impact on salmonids,’ whose health impacts ‘critically important and endangered species throughout the Pacific Northwest,’” she stated.
Pechman noted that the letter denying the petition for rule-making contains no explanation about how EPA was “marshaling its limited resources to protect Washington’s waters or why simply waiting for Washington to act would be reasonable to meet the CWA’s goals. This undermines EPA’s position.”
The judge also rejected EPA’s argument that the update to Washington’s human health criteria — a related set of standards — would protect aquatic life. She cited EPA’s own recommendations for copper, which are 1,200 micrograms per liter for humans but a maximum of 4.8 micrograms per liter for aquatic life. Under those recommendations, what is considered safe for humans is 250 times higher than what is considered safe for protecting salmon from acute toxicity. (Chronic levels are considered even lower for aquatic life.)
Further, the judge points out, EPA should not assume that its national recommendations would be adequate for the unique species of Washington state — “such as Puget Sound’s Southern Resident orcas who are some of the most contaminated marine mammals in the world due to bioaccumulation through the food stock, particularly through Chinook salmon.”
The judge ordered EPA to make a determination on the adequacy of the state’s aquatic life criteria within 180 days, but she agreed to allow additional time if EPA can provide “specific, detailed explanations of why additional time is necessary and what tasks remain to be performed.”
How that will mesh with Ecology’s time schedule is yet to be seen. Most relevant staffers with Ecology as well as EPA were out this week for the holiday. I will invite them to contribute comments, concerns and additional context when they return.
Ecology’s draft work plan covering the next four years does not lay out a specific timetable for adopting aquatic life criteria. The agency has taken comments on four possible approaches to adopting new water quality standards:

  • Option 1: Stagger three rule-making by group (metals, organics, non-priority)
  • Option 2: Stagger two rule-making by group (all metals, all organics)
  • Option 3: Rule-makings for different groups of chemicals based on highest priority
  • Option 4: Review and update all necessary criteria in one rule-making

In bringing its lawsuit, Northwest Environmental Advocates said Washington state has revised aquatic life criteria for some toxic chemicals since 1992, but many remain less protective than EPA’s recommended levels. For 14 chemicals, Washington has no aquatic life criteria at all, whereas EPA has established maximum levels in freshwater to avoid acute or chronic toxicity, according to NWEA. In saltwater, Washington has no criteria for 11 chemicals for which EPA provides recommended standards, the group says.
Under the Endangered Species Act, the U.S. Fish and Wildlife Service and NOAA’s National Marine Fisheries Service have reviewed the adequacy of aquatic life criteria for the states of California, Oregon and Idaho. (USFWS covers freshwater species, while NMFS covers saltwater species.) For a number of chemicals, the agencies have found that criteria adopted by the states and approved by EPA are likely to jeopardize the continued existence of a threatened or endangered species, the so-called “jeopardy” finding.
To show that Washington’s standards are outdated, NWEA listed more than two dozen chemicals for which the state uses numeric criteria that are either higher or close to the levels found to be in violation of the Endangered Species Act.
“Levels of these and other toxic pollutants are among the reasons that EPA has long been concerned about the health of one of Washington’s most important waterbodies, Puget Sound,” states the legal complaint (PDF 490 kb). “EPA features the toxic contamination of Southern Resident killer whales, Pacific herring and harbor seals in Puget Sound on its website as evidence of its ongoing concerns about toxic pollution of Washington’s waters.”